species:   Fugra
pid:       PID0939
parent:    FgmilR-7dps-04
paralog:   
locus:     NC_026474.1:1605462-1605652
matures:   ['UAGGCAGGAAGGCAUGUAGAGC', 'UCAAGUGCCAUGCCAUGCC']
srr:       SRR6516242
genome:    /Users/jax/+Genomes/Fungal_genomes/Fugra.GCF_000240135.3_ASM24013v3_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zeng2018-ds.SRR6516242.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zeng2018-ds.SRR6516242.cram NC_026474.1:1605462-1605652

1 out of bounds
12 alignments
10 proper strand
9 stranded perfect matches

                     ************************                                                                                                              *********************               
AACAGGGCAGGGGGCGUGUAAGGUAGGCAGGAAGGCAUGUAGAGCCUAAGGCAAGGUGAGGUGAGGUCGGGUGCAGGUGGGCUUGAGAGUAAGGGUAAGAGCGAGUGAGAACCUGGAAGGGAGCCAGAAAAUCCGACCUUCCGUGCUAGGGGUGGGGUCAAGUGCCAUGCCAUGCCAUGCCAUGCCAUGUU
((((.((((...(((((....((((((((....(((((...((.((((...(..((((.((.((((((((((.......(((((.......(((.................)))......))))).....)))))))))))).))))..)..)))).))..))))).)))).))))))))).)))).))))
-----------------------UAGGCAGGAAGGCAUGUAGAGC-------------------------------------------------------------------------------------------------------------------------------------------------- l=22 a=4 c
-------------------------------------------------------------------------------------------------------------------------------------------------------------UCAAGUGCCAUGCCAUGCC--------------- l=19 a=0 c*
-----------------------UAGGCAGGAAGGCAUGUAGAGC-------------------------------------------------------------------------------------------------------------------------------------------------- l=22 a=4 ma
-------------------------------------------------------------------------------------------------------------------------------------------------------------UCAAGUGCCAUGCCAUGCC--------------- l=19 a=0 ma*

-----------------------UAGGCAGGAAGGCAUGUAGAGC-------------------------------------------------------------------------------------------------------------------------------------------------- l=22 a=4 (c,ma)
-----------------------UAGGCAGGAAGGCAUGUAGAGCC------------------------------------------------------------------------------------------------------------------------------------------------- l=23 a=1 
-----------------------UAGGCAGGAAGGCAUGUAGAGCCU------------------------------------------------------------------------------------------------------------------------------------------------ l=24 a=3 
---------------------------------------------------------------------------------------------------AGCGAGUGAGAACCUGGAAGGGAGC------------------------------------------------------------------- l=25 a=1 
---------------------------------------------------------------------------------------------------gGCGAGUGAGAACCUGGAAGGGAGC------------------------------------------------------------------- l=25 a=1 

mb-01011
ax-1001011
ku-01
ss-111111101100
fn-111
